Setup

This handles the initial setup for an autoresearch agent by creating the necessary folder structure and configuration files. You'd run it once at the start of a new research project to get everything organized. It's the kind of boilerplate setup work that's easy to forget or do inconsistently, so having it automated makes sense. The scope is pretty narrow, just scaffolding out directories and dropping in starter configs, but that's exactly what you want from a setup utility. Think of it as the init command for research workflows.