Inventory Manager

End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathway-enrichment), and publication figures (scientific-visualization). Use whenever the user has bulk RNA-seq reads or quant output and wants a complete, reproducible differential-expression workflow — e.g. "analyze my RNA-seq", "FASTQ to DESeq2", "run nf-core/rnaseq", "STAR/Salmon quantification", "build a counts matrix for DESeq2", or "go from reads to differentially expressed genes and enriched pathways". Routes between an nf-core/rnaseq (Nextflow) path and a standalone STAR/Salmon path, and covers experimental design, strandedness, and QC gates. For single-cell RNA-seq use the scanpy skill instead.

Operational knowledge for the daily-brief digest pipeline (this project). RSS/API fetchers, pluggable LLM enrichment (default claude CLI on Max; also anthropic/openai/deepseek/minimax API), trading section, HTML rendering, cross-platform scheduler integration (Windows Task Scheduler / macOS launchd / Linux cron). Load when the user asks about running daily / regenerating sections / debugging a failed run / adding or disabling sources / LLM quota / scheduler / why a tab shows wrong data / why a source failed / switching LLM backend. Always prefer the documented npm commands over re-implementing logic. Diagnose by reading logs/daily-*.log first, then logs/llm-calls.jsonl for LLM-side issues.

Provision Microsoft Entra Agent Identity Blueprints, BlueprintPrincipals, and per-instance Agent Identities via Microsoft Graph, and configure OAuth 2.0 token exchange (fmi_path, OBO, cross-tenant) including the Microsoft Entra SDK for AgentID sidecar. USE FOR: Agent Identity Blueprint, BlueprintPrincipal, agent OAuth, fmi_path token exchange, agent OBO, Workload Identity Federation for agents, polyglot agent auth, Microsoft.Identity.Web.AgentIdentities. DO NOT USE FOR: standard Entra app registration (use entra-app-registration), Azure RBAC (use azure-rbac), Microsoft Foundry agent authoring (use microsoft-foundry).

This skill should be used when writing, enhancing, or evaluating the launch prompt for a long-running autonomous agent or a parallel multi-agent orchestration attacking a hard problem: pseudo-formal task briefs that define terms and an exact success predicate linguistically, enumerate non-counting outcomes, set persistence rules with explicit stop and return conditions and effort floors, manage a diverse portfolio of parallel approaches with an approach registry and blocked-route bookkeeping, and gate the return on adversarial audit. Route agent topology and coordination protocols to multi-agent-patterns, runtime control surfaces and loop governance to harness-engineering, evaluator and quality-gate construction to evaluation, judge design to advanced-evaluation, and compaction or memory mechanics to context-compression and memory-systems.

Turn an investment agent into a supply-chain bottleneck hunter. Use this skill for source-backed investment research, live market/theme scans, AI/semi/technology value-chain mapping, A-share/HK/US stock screening, thesis stress tests, and Serenity-inspired research conversations. Trigger on requests like "用 Serenity 的方式看", "深度调研", "产业链/供应链/卡点/瓶颈", "A股 AI 半导体哪个最值得研究", "find unknown bottlenecks", "rank candidates", or "challenge this thesis". Outputs plain-language reasoning, ranked research priorities, evidence chains, risks, and next verification steps. Research support only; no trade execution.

Use this skill when the user is doing hands-on DOCA RDMA programming on a BlueField DPU, ConnectX NIC, or DOCA host — bringing up an RDMA context on a doca_dev, picking a connection method (RDMA CM, bridge/OOB, or gRPC exchange of doca_rdma_export()), enabling one of the eleven task types (Send/Receive/Send-Imm, Read/Write/Write-Imm, Atomic CmpSwap/FetchAdd, Get/Set/Add Remote Sync Event), setting matching mmap + RDMA permissions, sizing queues and connections, querying doca_rdma_cap_*, or debugging DOCA_ERROR_* from an RDMA call. Trigger even when the user does not mention "DOCA RDMA" — typical implicit phrasings include "one-sided read returns permission denied", "completions never arrive after submit", "connection callback never fires", "how do I do atomic compare-and-swap over RoCE", or "send queue hits DOCA_ERROR_FULL under burst". Refuse and route elsewhere for general RDMA / ibverbs theory (queue pairs, MRs, RoCE vs IB), installing DOCA itself, or non-RDMA DOCA libraries.