Neuropixels Analysis

Handles the full Neuropixels pipeline from raw SpikeGLX or Open Ephys recordings through Kilosort4 spike sorting to curated units. Wraps SpikeInterface with opinionated workflows from Allen Institute and International Brain Laboratory, including motion correction, quality metrics computation, and automated curation. The AI-assisted visual analysis is clever: Claude can examine waveform plots directly to help classify borderline units that fall between your metric thresholds. Best for electrophysiology labs running Neuropixels 1.0 or 2.0 probes who want current best practices without reinventing preprocessing chains. Assumes you understand the neuroscience but saves you from stitching together fragmented documentation across five different packages.

Install to Claude Code

npx -y skills add davila7/claude-code-templates --skill neuropixels-analysis --agent claude-code