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Independent project, not affiliated with Anthropic
k-dense-ai avatar

Dnanexus Integration

k-dense-ai/scientific-agent-skills
1.1k installs33k stars
Summary

If you're running genomics pipelines on DNAnexus, this gives Claude the context to help you build apps, wrangle data, and orchestrate jobs through dxpy. It covers the five main areas you'll hit: writing applets with proper entry points, uploading and organizing FASTQ/BAM/VCF files, launching and monitoring workflow jobs, scripting with the Python SDK, and configuring dxapp.json with dependencies. The reference docs are well organized around real use cases like batch processing samples or chaining multi-step analyses. You'll need a DNAnexus account obviously, but if you're already on the platform and want Claude to understand dx commands, job references, and data object patterns, this is solid grounding for that domain.

Install to Claude Code

npx -y skills add k-dense-ai/scientific-agent-skills --skill dnanexus-integration --agent claude-code

Installs into .claude/skills of the current project.

CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
inference shell
inference shell
create and run specialised agents in minutes
build now →
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
inference shell
inference shell
create and run specialised agents in minutes
build now →
Files
SKILL.md

Select a file.

Featured
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
inference shell
inference shell
create and run specialised agents in minutes
build now →
Categories
DevOps & CI/CDAI & Agent BuildingAutomation & WorkflowsCLI & Terminal
First SeenJun 3, 2026
View on GitHub

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k-dense-ai avatar
latchbio-integration

k-dense-ai/scientific-agent-skills

Build, register, debug, and operate bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP. Use when authoring or deploying Latch workflows, configuring resources or interfaces, moving data, integrating Registry, or launching and monitoring runs.
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dotnet avatar
mtp-hot-reload

dotnet/skills

Suggests using Microsoft Testing Platform (MTP) hot reload to iterate fixes on failing tests without rebuilding. Use when user says "hot reload tests", "iterate on test fix", "run tests without rebuilding", "speed up test loop", "fix test faster", or needs to set up MTP hot reload to rapidly iterate on test failures. Covers setup (NuGet package, environment variable, launchSettings.json) and the iterative workflow for fixing tests. DO NOT USE FOR: writing test code, diagnosing test failures, running tests normally with dotnet test (use run-tests), applying test filters, producing TRX reports, CI/CD pipeline configuration, or Visual Studio Test Explorer hot reload (which is a different feature).
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daymade avatar
developing-ios-apps

daymade/claude-code-skills

Develops iOS/macOS apps with XcodeGen, SwiftUI, and SPM, including Apple Developer signing, notarization, and CI/CD pipelines. Use when building iOS/macOS apps, fixing Xcode build failures, deploying to real devices, or configuring CI/CD signing. Triggers on XcodeGen project.yml, SPM dependency issues, code signing errors (Error -25294, keychain mismatch, adhoc fallback, EMFILE, notarization credential conflict), "Library not loaded @rpath", Electron @electron/osx-sign / @electron/notarize, notarytool, or certificate/provisioning problems.
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zxkane avatar
aws-cdk-development

zxkane/aws-skills

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cxuu/golang-skills

Use when setting up linting for a Go project, configuring golangci-lint, or adding Go checks to a CI/CD pipeline. Also use when starting a new Go project and deciding which linters to enable, even if the user only asks about "code quality" or "static analysis" without mentioning specific linter names. Does not cover code review process (see go-code-review).
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publish-models

replicate/skills

Push and publish custom AI models to Replicate, and set up CI/CD for releasing new model versions safely. Use when running cog push, deploying a model to Replicate, releasing a new version, validating a model with cog-safe-push before publishing, configuring a Replicate deployment, setting up GitHub Actions for model releases, or porting a community model to an official one. Trigger on phrases like "push a model to Replicate", "publish a model", "deploy a model", "release a new version", "cog push", "cog-safe-push", "model CI", "r8.im", or "schema compatibility", and when referencing github.com/replicate/cog-safe-push or github.com/replicate/model-ci-template. Covers cog push, the full cog-safe-push config (test cases, fuzz, deployment, official_model), GitHub Actions patterns, multi-model matrix pushes, and post-publish monitoring. Assumes you already have a working Cog project; see build-models if you need to package one first.
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