Summary
This connects you to NCBI's Gene Expression Omnibus, the public repository with 264,000+ genomics studies and 8 million samples. You get programmatic access through GEOparse and E-utilities to search for microarray and RNA-seq datasets, pull down expression matrices, and grab supplementary files. The hierarchical structure (GSE series, GSM samples, GPL platforms) takes a minute to internalize, but once you do, it's straightforward to filter by organism or condition, extract gene-specific profiles, or build comparative analyses. Handles both the curated GDS collections and raw experimental data. If you're doing transcriptomics work and need existing datasets for validation or meta-analysis, this saves you from manual downloads.
Install to Claude Code
npx -y skills add davila7/claude-code-templates --skill geo-database --agent claude-codeInstalls into .claude/skills of the current project.
Keeps your Mac awake while Claude Code, Codex or Cursor works. Lets it sleep when they are done.
Try free for 7 days →
Block distracting apps from your iPhone permanently without a 3rd party app. Free and open source.
Block now (100% free) →
Notes, actions and memory. Without a meeting bot. First month 100% off.
Download for free →
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Free an open-source skills that make AI coding agents easier to understand, verify, and control.
Download for free →
Connect your Claude agent to live crypto prices and trading routes via 1inch
Get the MCP →Files
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Keeps your Mac awake while Claude Code, Codex or Cursor works. Lets it sleep when they are done.
Try free for 7 days →Block distracting apps from your iPhone permanently without a 3rd party app. Free and open source.
Block now (100% free) →Notes, actions and memory. Without a meeting bot. First month 100% off.
Download for free →belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →Free an open-source skills that make AI coding agents easier to understand, verify, and control.
Download for free →Connect your Claude agent to live crypto prices and trading routes via 1inch
Get the MCP →
