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Built for the Claude Code community with Claude Code by mertbuilds.com

Independent project, not affiliated with Anthropic
mims-harvard avatar

Tooluniverse Systems Biology

mims-harvard/tooluniverse
389 installs1.6k stars
Summary

Integrates five major pathway databases (Reactome, KEGG, WikiPathways, BioCarta, NCI-PID) for systems biology analysis. Run pathway enrichment on gene lists from RNA-seq or proteomics, map proteins to their biological pathways across multiple sources, or search by keyword to find relevant pathways and computational models. The skill emphasizes compute over description, pushing you to run actual Python enrichment statistics rather than theorizing. One smart touch is the built-in skepticism about enrichment versus causation, reminding you that three genes hitting a 200-member pathway means less than fifteen genes in a 40-member one. Cross-database validation is baked in since pathway annotations frequently disagree between sources.

Install to Claude Code

npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-systems-biology --agent claude-code

Installs into .claude/skills of the current project.

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Files
SKILL.md

Select a file.

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Categories
Backend & APIsDesign & UI/UXDatabases
First SeenJun 3, 2026
View on GitHub

More from mims-harvard/tooluniverse

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