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mims-harvard avatar

Setup Tooluniverse

mims-harvard/tooluniverse
408 installs1.6k stars
Summary

This walks you through installing ToolUniverse, the open-source gateway to 2,000+ scientific databases like PubMed, UniProt, and ChEMBL. You get three access patterns: MCP server for chat-based queries in Claude Desktop or Cursor, a CLI with nine subcommands (tu find, tu run, tu test), or a Python SDK with typed imports and JSON-based calls. The guide is explicitly step-by-step and language-aware, covering uv setup, config file locations for a dozen AI clients, API key setup, and the difference between the 1,200+ tools in compact mode versus direct execution. Use this when someone asks how to install ToolUniverse, which mode to pick, or needs MCP troubleshooting for scientific tooling.

Install to Claude Code

npx -y skills add mims-harvard/tooluniverse --skill setup-tooluniverse --agent claude-code

Installs into .claude/skills of the current project.

CodeRabbit
CodeRabbit
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inference shell
inference shell
create and run specialised agents in minutes
build now →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
inference shell
inference shell
create and run specialised agents in minutes
build now →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Files
SKILL.md

Select a file.

Featured
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
inference shell
inference shell
create and run specialised agents in minutes
build now →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
Make your agent a DeFi expert
Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
CodeScene MCP Server
Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Categories
Backend & APIsTesting & QADevOps & CI/CDAI & Agent BuildingDebuggingPythonCLI & Terminal
First SeenJun 3, 2026
View on GitHub

More from mims-harvard/tooluniverse

All 68 skills →
  • Tooluniverse Disease Research404
  • Tooluniverse Protein Structure Retrieval397
  • Tooluniverse Epigenomics389
  • Tooluniverse Systems Biology389
  • Tooluniverse Pharmacovigilance388
  • Tooluniverse Network Pharmacology387
  • Tooluniverse Precision Oncology385
  • Tooluniverse Chemical Compound Retrieval381
  • Create Tooluniverse Skill376
  • Tooluniverse Proteomics Analysis375
  • Tooluniverse Rare Disease Diagnosis375
  • Tooluniverse Target Research373
  • Tooluniverse Expression Data Retrieval370
  • Tooluniverse Clinical Trial Matching367
  • Tooluniverse Spatial Transcriptomics367
  • Tooluniverse Drug Repurposing366
  • Tooluniverse Protein Therapeutic Design366
  • Tooluniverse Sdk366
  • Devtu Optimize Skills364
  • Tooluniverse Statistical Modeling364
  • Tooluniverse Chemical Safety363
  • Tooluniverse Rnaseq Deseq2362
  • Devtu Create Tool359
  • Tooluniverse Binder Discovery359

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