Biomcp

BioMCP is a unified biomedical data query tool that consolidates access to multiple sources—including PubTator3, Europe PMC, Semantic Scholar, cBioPortal, and g:Profiler—through a single command grammar and binary. It provides search, pivot, enrichment, and batch query capabilities across literature, genes, variants, drugs, diseases, pathways, and proteins, with local study analytics and visualization features (terminal, SVG, PNG charts). The server solves the fragmentation problem of biomedical research by eliminating the need to learn different APIs and identifier schemes for each data source, enabling researchers and clinical agents to move seamlessly between evidence types without workflow rebuilding.