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MCP servers/Data & Analytics
fhirfly-io avatar

Mcp Server

fhirfly-io/fhirfly-mcp-server

Connects Claude to FHIRfly's healthcare reference APIs for looking up live data from FDA, CMS, CDC, and NHS sources. You get tools for querying NDC drug codes, NPI provider records, ICD-10 diagnoses, LOINC lab tests, CVX vaccines, SNOMED concepts, and FDA drug labels with interaction checking. It also handles claims intelligence like NCCI edits, Medicare fee schedules, and coverage determinations. Batch operations let you look up hundreds of codes at once. Reach for this when you need Claude to work with current clinical terminology, verify provider credentials, check drug interactions from FDA labels, or validate billing codes against CMS rules instead of relying on stale training data.

last updated
Mar 6, 2026
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Configuration

FHIRFLY_API_KEY*secret

FHIRfly API key (get one at https://fhirfly.io)

Readme

@fhirfly-io/mcp-server

MCP (Model Context Protocol) server for connecting Claude Desktop to FHIRfly healthcare reference data APIs.

What is this?

This package lets Claude Desktop look up real healthcare reference data including:

  • NDC - Drug products and packages (FDA)
  • NPI - Healthcare provider identifiers (CMS)
  • RxNorm - Drug terminology (NLM)
  • LOINC - Laboratory codes (Regenstrief Institute)
  • ICD-10 - Diagnosis and procedure codes (CMS)
  • CVX/MVX - Vaccine codes (CDC)
  • FDA Drug Labels - Prescribing information
  • SNOMED CT - Clinical concepts (IPS free set)
  • HCC - CMS Hierarchical Condition Category risk adjustment mappings
  • OPCS-4 - UK NHS procedure classification codes
  • dm+d - UK Dictionary of Medicines and Devices (NHS)
  • UCUM - Unified Code for Units of Measure (NLM)
  • RxClass - Drug classification hierarchy (NLM)
  • HCPCS - Level II procedure and supply codes (CMS)
  • MS-DRG - Diagnosis Related Groups for inpatient payment (CMS)
  • POS - Place of Service codes for claims submission (CMS)
  • J-Code/NDC Crosswalk - Bidirectional HCPCS J-code to NDC mapping (CMS)
  • DDI Reference — Drug-drug interaction text from FDA labels + RxNorm enrichment
  • Connectivity - Provider FHIR endpoints and Direct addresses
  • SMA - State Medicaid Agency FHIR endpoint directory (CMS)
  • Claims Intelligence - NCCI edits, MUE limits, PFS/RVU data, coverage determinations

When you ask Claude about medications, providers, or clinical codes, it can look up accurate, current information instead of relying on training data.

Prerequisites

  1. Claude Desktop - Download from claude.ai/download
  2. Node.js 18+ - Download from nodejs.org
  3. FHIRfly API Key - Get one at fhirfly.io (free tier available)

Quick Setup

Step 1: Get a FHIRfly API Key

  1. Go to fhirfly.io and sign up
  2. Navigate to Dashboard > Credentials
  3. Click Create Credential and select MCP (Claude Desktop)
  4. Copy your API key (starts with ffly_)

Step 2: Configure Claude Desktop

Find your Claude Desktop config file:

  • macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
  • Windows: %APPDATA%\Claude\claude_desktop_config.json

Add the FHIRfly server configuration:

{
  "mcpServers": {
    "fhirfly": {
      "command": "npx",
      "args": ["-y", "@fhirfly-io/mcp-server"],
      "env": {
        "FHIRFLY_API_KEY": "ffly_live_your_key_here"
      }
    }
  }
}

Replace ffly_live_your_key_here with your actual API key.

Step 3: Restart Claude Desktop

Completely quit Claude Desktop and reopen it. The FHIRfly tools should now be available.

Verify It Works

Try asking Claude:

  • "What is NDC 0069-0151-01?"
  • "Look up NPI 1234567893"
  • "Search for COVID vaccines in the CVX database"
  • "What are the drug interactions for Lipitor?"
  • "Which states have implemented Medicaid FHIR endpoints?"
  • "Show me the FHIR endpoint details for California's Medicaid program"
  • "What is the UCUM code for milligrams per deciliter?"
  • "Convert 100 mg to grams"
  • "What drugs are in the HMG-CoA Reductase Inhibitors class?"
  • "Check interactions between aspirin and warfarin"

Claude should use the FHIRfly tools to look up real data.

Available Tools

ToolDescription
ndc_getLook up drug by NDC code
ndc_searchSearch drugs by name, ingredient, etc.
npi_getLook up provider by NPI number
npi_searchSearch providers by name, specialty, location
rxnorm_getLook up drug by RxCUI
rxnorm_searchSearch drug terminology
loinc_getLook up lab test by LOINC code
loinc_searchSearch lab codes
icd10_getLook up diagnosis/procedure code
icd10_searchSearch ICD-10 codes
cvx_getLook up vaccine by CVX code
cvx_searchSearch vaccine codes
mvx_getLook up vaccine manufacturer
mvx_searchSearch manufacturers
fda_label_lookupLook up FDA drug label
fda_label_searchSearch drug labels
fda_label_safetyGet safety info (boxed warnings, contraindications)
fda_label_interactionsGet drug interaction info
fda_label_dosingGet dosing information
fda_label_sectionsGet specific label sections
snomed_getLook up clinical concept by SNOMED CT ID
snomed_searchSearch SNOMED CT IPS concepts
snomed_mappingsFind cross-terminology mappings for a SNOMED concept
npi_connectivityLook up provider connectivity (FHIR endpoints)
sma_list_statesList states with Medicaid FHIR endpoint status
sma_get_stateGet SMA FHIR endpoint details for a state
sma_statsGet aggregate SMA implementation statistics
ncci_validateCheck if two codes can be billed together (NCCI)
mue_lookupLook up max units of service (MUE limits)
pfs_lookupLook up Medicare fee schedule / RVU data
coverage_checkCheck LCD/NCD coverage determinations
HCPCS / MS-DRG / POS / J-Code Tools
hcpcs_getLook up an HCPCS Level II procedure/supply code
hcpcs_modifier_getLook up an HCPCS modifier code
hcpcs_searchSearch HCPCS Level II codes
msdrg_getLook up an MS-DRG code
msdrg_searchSearch MS-DRG codes
pos_getLook up a Place of Service code
jcode_by_hcpcsFind NDCs mapped to a J-code/HCPCS code
jcode_by_ndcFind HCPCS codes mapped to an NDC
HCC / OPCS-4 Tools
hcc_getLook up HCC risk adjustment mappings for an ICD-10 code
hcc_reverseFind all ICD-10 codes mapping to a given HCC category
hcc_searchSearch the HCC crosswalk by code, model, or category
opcs4_getLook up an OPCS-4 UK NHS procedure code
opcs4_searchSearch OPCS-4 procedure codes
dm+d Tools
dmd_getLook up a UK dm+d medicine/device by SNOMED code
dmd_searchSearch UK dm+d medicines and devices
UCUM Tools
ucum_getLook up a UCUM unit code (e.g., mg, mL, kg/m2)
ucum_searchSearch units of measure by name or description
ucum_validateValidate a UCUM expression for correctness
ucum_convertConvert a value between compatible UCUM units
RxClass Tools
rxclass_getLook up a drug class by class ID
rxclass_searchSearch drug classifications by name or type
rxclass_membersList drugs belonging to a drug class
DDI Tools
check_drug_interactionsCheck drug-drug interactions for multiple drugs (FDA label text + RxNorm)
Batch Tools
ndc_batchLook up multiple NDC codes (max 500)
npi_batchLook up multiple NPI numbers (max 100)
icd10_batchLook up multiple ICD-10 codes (max 100)
rxnorm_batchLook up multiple RxCUIs (max 100)
loinc_batchLook up multiple LOINC codes (max 100)
cvx_batchLook up multiple CVX codes (max 100)
mvx_batchLook up multiple MVX codes (max 100)
fda_label_batchLook up multiple FDA labels (max 50)

Configuration Options

Environment VariableDescriptionDefault
FHIRFLY_API_KEYYour FHIRfly API key (required)-
FHIRFLY_API_URLAPI base URLhttps://api.fhirfly.io
FHIRFLY_DEBUGEnable debug logging (1 or true)false
FHIRFLY_TIMEOUTFetch timeout in milliseconds30000

Troubleshooting

"FHIRFLY_API_KEY environment variable is required"

Your API key isn't configured. Make sure:

  1. You have a valid API key from fhirfly.io
  2. It's set in the env section of your Claude Desktop config
  3. The key starts with ffly_

"Invalid API key format"

FHIRfly API keys start with ffly_. Check that you copied the full key.

"Authentication failed"

Your API key may be invalid or expired. Generate a new one at fhirfly.io/dashboard/credentials.

Claude doesn't show FHIRfly tools

  1. Make sure you completely quit and restarted Claude Desktop
  2. Check your config file syntax (must be valid JSON)
  3. Enable debug mode to see what's happening:
{
  "mcpServers": {
    "fhirfly": {
      "command": "npx",
      "args": ["-y", "@fhirfly-io/mcp-server"],
      "env": {
        "FHIRFLY_API_KEY": "your_key",
        "FHIRFLY_DEBUG": "1"
      }
    }
  }
}

"Rate limit exceeded"

You've hit your plan's rate limit. Wait a moment and try again, or upgrade your plan at fhirfly.io.

How It Works

┌─────────────────┐     ┌─────────────────┐     ┌─────────────────┐
│  Claude Desktop │────▶│  This Package   │────▶│  FHIRfly API    │
│                 │     │  (runs locally) │     │  (cloud)        │
│  "What is       │◀────│                 │◀────│                 │
│   NDC 123..."   │     │  Translates MCP │     │  Returns drug   │
│                 │     │  ↔ HTTPS        │     │  data           │
└─────────────────┘     └─────────────────┘     └─────────────────┘

This package runs on your computer as a bridge between Claude Desktop and the FHIRfly API. It:

  1. Receives requests from Claude Desktop via stdin
  2. Translates them to HTTPS requests to FHIRfly
  3. Returns the results to Claude via stdout

Your API key is sent to FHIRfly over HTTPS. No healthcare data is stored locally.

Links

  • FHIRfly Documentation
  • MCP Setup Guide
  • Get an API Key
  • Report Issues

Data Sources & Licensing

Data SourceProviderLicense
NDC DirectoryFDAPublic domain
NPPES (NPI)CMSPublic domain
RxNormNLM (NIH)UMLS license (free)
LOINCRegenstrief InstituteFree with attribution
ICD-10-CM/PCSCMSPublic domain
CVX/MVXCDCPublic domain
FDA Drug LabelsFDA/openFDAPublic domain
SNOMED CT IPSSNOMED InternationalCC BY 4.0
HCC CrosswalkCMSPublic domain
OPCS-4NHS EnglandOGL v3.0 (Crown copyright)
dm+dNHS England / NHSBSAOGL v3.0 (Crown copyright)
UCUMNLM (NIH) / Regenstrief InstituteFree with attribution
RxClassNLM (NIH)UMLS license (free)
SMA Endpoint DirectoryCMSPublic domain
HCPCS Level IICMSPublic domain
MS-DRGCMSPublic domain
Place of ServiceCMSPublic domain
J-Code/NDC CrosswalkCMSPublic domain
NCCI/MUE/PFSCMSPublic domain
DDI ReferenceFDA + NLMPublic domain

FHIRfly aggregates and indexes these data sources. See fhirfly.io/docs for details.

Changelog

See CHANGELOG.md for release history.

License

MIT - see LICENSE

Details

Repository
github.com/fhirfly-io/fhirfly-mcp-server
Category
Data & Analytics
Package
@fhirfly-io/mcp-server
Transport
STDIO
Auth
Required
Registry
MCP registry, active

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