Connects Claude to WikiPathways, an open community database of biological pathways and molecular interactions. Instead of wrestling with pathway APIs directly, you get a natural language interface through the ask_pipeworx tool where you can query pathway data in plain English and the gateway handles tool selection and parameter mapping. Part of the larger Pipeworx gateway that bundles 812+ data sources behind a single MCP endpoint. Useful when you need programmatic access to curated pathway diagrams, gene interactions, or metabolic networks without implementing WikiPathways API calls yourself. Runs over streamable HTTP, so no local setup required.
WikiPathways MCP — open community pathway database.
Part of Pipeworx — an MCP gateway connecting AI agents to 812+ live data sources.
| Tool | Description |
|---|
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"wikipathways": {
"url": "https://gateway.pipeworx.io/wikipathways/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 812+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Wikipathways data" })
The gateway picks the right tool and fills the arguments automatically.
MIT
hovecapital/read-only-local-postgres-mcp-server
cocaxcode/database-mcp
io.github.infoinlet-marketplace/mcp-mysql
io.github.cybeleri/database-admin
io.github.yash-0620/postgres-mcp-secured