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Built for the Claude Code community with Claude Code by @mertduzgun

Independent project, not affiliated with Anthropic
  1. MCP
  2. /
  3. GWAS Bioinformatics MCP Server

GWAS Bioinformatics MCP Server

Editor's Note

This server wraps 14 major bioinformatics databases into 30+ tools you can query through Claude. You get UniProt and Ensembl for gene lookups, ClinVar for variant pathogenicity, STRING for protein interactions, AlphaFold and PDB for structures, KEGG for pathways, Open Targets and PharmGKB for drug discovery, plus GWAS Catalog, GTEx eQTLs, and OMIM disease data. All responses are cached for an hour to keep things fast. Reach for this when you're doing computational biology work and want to pull data from multiple sources without juggling API keys or writing scrapers. The tool names are straightforward: search_uniprot, get_clinvar_variant, get_protein_interactions, search_kegg_pathway.

Install

claude mcp add --transport stdio zaeyasa-gwas-mcp -- uvx gwas-mcp
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