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mims-harvard avatar

Protein Interaction Network Analysis

mims-harvard/tooluniverse
1.6k stars
Summary

This is a solid workflow for analyzing protein interaction networks without getting lost in the biology. It walks through identifier mapping, network retrieval from STRING and BioGRID, enrichment analysis, and optional structural data. The standout feature is the domain reasoning guidance: it actually explains that a high STRING combined_score doesn't mean two proteins physically bind, and tells you to check the experimental score instead. That kind of clarity matters when you're building tools for researchers who need accurate interpretations, not just data dumps. Requires a BioGRID API key for the fallback database. Built by the Harvard medical informatics group, which shows in the thoughtful workflow design.

Install to Claude Code

npx -y skills add mims-harvard/tooluniverse --skill "Protein Interaction Network Analysis" --agent claude-code

Installs into .claude/skills of the current project.

CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
Lid closed, agents working
Lid closed, agents working
Keeps your Mac awake while Claude Code, Codex or Cursor works. Lets it sleep when they are done.
Try free for 7 days →
Block distraction from your iPhone for freeBlock distraction from your iPhone for free
Block distraction from your iPhone for free
Block distracting apps from your iPhone permanently without a 3rd party app. Free and open source.
Block now (100% free) →
Granola, the best AI meeting recorder
Granola, the best AI meeting recorder
Notes, actions and memory. Without a meeting bot. First month 100% off.
Download for free →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Open Steps
Open Steps
Free an open-source skills that make AI coding agents easier to understand, verify, and control.
Download for free →
AppSignal
AppSignal
Monitor with ease. Code with confidence.
Start Free Trial →
Agent, connect blockchain
Agent, connect blockchain
Connect your Claude agent to live crypto prices and trading routes via 1inch
Get the MCP →
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
Lid closed, agents working
Lid closed, agents working
Keeps your Mac awake while Claude Code, Codex or Cursor works. Lets it sleep when they are done.
Try free for 7 days →
Block distraction from your iPhone for freeBlock distraction from your iPhone for free
Block distraction from your iPhone for free
Block distracting apps from your iPhone permanently without a 3rd party app. Free and open source.
Block now (100% free) →
Granola, the best AI meeting recorder
Granola, the best AI meeting recorder
Notes, actions and memory. Without a meeting bot. First month 100% off.
Download for free →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Open Steps
Open Steps
Free an open-source skills that make AI coding agents easier to understand, verify, and control.
Download for free →
AppSignal
AppSignal
Monitor with ease. Code with confidence.
Start Free Trial →
Agent, connect blockchain
Agent, connect blockchain
Connect your Claude agent to live crypto prices and trading routes via 1inch
Get the MCP →
Files
SKILL.md

Select a file.

Featured
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
Lid closed, agents working
Lid closed, agents working
Keeps your Mac awake while Claude Code, Codex or Cursor works. Lets it sleep when they are done.
Try free for 7 days →
Block distraction from your iPhone for freeBlock distraction from your iPhone for free
Block distraction from your iPhone for free
Block distracting apps from your iPhone permanently without a 3rd party app. Free and open source.
Block now (100% free) →
Granola, the best AI meeting recorder
Granola, the best AI meeting recorder
Notes, actions and memory. Without a meeting bot. First month 100% off.
Download for free →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
Open Steps
Open Steps
Free an open-source skills that make AI coding agents easier to understand, verify, and control.
Download for free →
AppSignal
AppSignal
Monitor with ease. Code with confidence.
Start Free Trial →
Agent, connect blockchain
Agent, connect blockchain
Connect your Claude agent to live crypto prices and trading routes via 1inch
Get the MCP →
Categories
Backend & APIsProductivity & PlanningDesign & UI/UX
First SeenJun 3, 2026
View on GitHub

More from mims-harvard/tooluniverse

All 68 skills →
  • Tooluniverse Sequence Retrieval1.6k
  • Tooluniverse Literature Deep Research620
  • Tooluniverse Image Analysis617
  • Tooluniverse Clinical Guidelines444
  • Tooluniverse433
  • Tooluniverse Drug Research432
  • Tooluniverse Clinical Trial Design423
  • Tooluniverse Drug Drug Interaction413
  • Setup Tooluniverse408
  • Tooluniverse Disease Research404
  • Tooluniverse Protein Structure Retrieval397
  • Tooluniverse Epigenomics389
  • Tooluniverse Systems Biology389
  • Tooluniverse Pharmacovigilance388
  • Tooluniverse Network Pharmacology387
  • Tooluniverse Precision Oncology385
  • Tooluniverse Chemical Compound Retrieval381
  • Create Tooluniverse Skill376
  • Tooluniverse Proteomics Analysis375
  • Tooluniverse Rare Disease Diagnosis375
  • Tooluniverse Target Research373
  • Tooluniverse Expression Data Retrieval370
  • Tooluniverse Clinical Trial Matching367
  • Tooluniverse Spatial Transcriptomics367

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