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Independent project, not affiliated with Anthropic
mims-harvard avatar

Protein Interaction Network Analysis

mims-harvard/tooluniverse
1.6k stars
Summary

This is a solid workflow for analyzing protein interaction networks without getting lost in the biology. It walks through identifier mapping, network retrieval from STRING and BioGRID, enrichment analysis, and optional structural data. The standout feature is the domain reasoning guidance: it actually explains that a high STRING combined_score doesn't mean two proteins physically bind, and tells you to check the experimental score instead. That kind of clarity matters when you're building tools for researchers who need accurate interpretations, not just data dumps. Requires a BioGRID API key for the fallback database. Built by the Harvard medical informatics group, which shows in the thoughtful workflow design.

Install to Claude Code

npx -y skills add mims-harvard/tooluniverse --skill "Protein Interaction Network Analysis" --agent claude-code

Installs into .claude/skills of the current project.

CodeRabbit
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Capacitor - Shared memory for your team’s coding agents.
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Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
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Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
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Integrate web data into your AI product. One API to scrape website & brand data.
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belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
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inference shell
inference shell
create and run specialised agents in minutes
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CodeRabbit
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AI writes the code. CodeRabbit catches the slop.
Try For Free →
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Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
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Agent, run crypto. Access onchain data & trade routes via 1inch.
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Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
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CodeScene MCP ServerCodeScene MCP Server
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Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
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Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
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belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
inference shell
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Files
SKILL.md

Select a file.

Featured
CodeRabbit
CodeRabbit
AI writes the code. CodeRabbit catches the slop.
Try For Free →
MCP-ready Email SendingMCP-ready Email Sending
MCP-ready Email Sending
Plug Mailtrap into your AI workflow and let it handle the email.
Connect Mailtrap MCP →
Make your agent a DeFi expert
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Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
Capacitor - Shared memory for your team’s coding agents.
Capacitor - Shared memory for your team’s coding agents.
Make coding agent sessions - Searchable, Shareable, Vendor-neutral & Scored.
Try For Free →
CodeScene MCP ServerCodeScene MCP Server
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Your agent targets a perfect 10 Code Health score. Deterministic. Every commit.
Try For Free →
Give your AI the whole web as clean markdownGive your AI the whole web as clean markdown
Give your AI the whole web as clean markdown
Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →
belt - the only tool your agent needs
belt - the only tool your agent needs
belt cli automatically finds the best tools and skills for your agent. image, video, music, tts...
one prompt install →
inference shell
inference shell
create and run specialised agents in minutes
build now →
Categories
Backend & APIsProductivity & PlanningDesign & UI/UX
First SeenJun 3, 2026
View on GitHub

More from mims-harvard/tooluniverse

All 68 skills →
  • Tooluniverse Sequence Retrieval1.6k
  • Tooluniverse Literature Deep Research620
  • Tooluniverse Image Analysis617
  • Tooluniverse Clinical Guidelines444
  • Tooluniverse433
  • Tooluniverse Drug Research432
  • Tooluniverse Clinical Trial Design423
  • Tooluniverse Drug Drug Interaction413
  • Setup Tooluniverse408
  • Tooluniverse Disease Research404
  • Tooluniverse Protein Structure Retrieval397
  • Tooluniverse Epigenomics389
  • Tooluniverse Systems Biology389
  • Tooluniverse Pharmacovigilance388
  • Tooluniverse Network Pharmacology387
  • Tooluniverse Precision Oncology385
  • Tooluniverse Chemical Compound Retrieval381
  • Create Tooluniverse Skill376
  • Tooluniverse Proteomics Analysis375
  • Tooluniverse Rare Disease Diagnosis375
  • Tooluniverse Target Research373
  • Tooluniverse Expression Data Retrieval370
  • Tooluniverse Clinical Trial Matching367
  • Tooluniverse Spatial Transcriptomics367

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