Connects Claude to the EBI PRIDE Archive, a major proteomics and mass spectrometry data repository used by researchers worldwide. Part of the Pipeworx gateway ecosystem, which routes requests to 823+ scientific data sources. The implementation is light on documented tools in the source, but supports natural language queries through ask_pipeworx rather than direct tool calls. You'd use this when analyzing proteomics datasets, searching for mass spec experiments, or integrating scientific research data into your workflow. Runs as a hosted service over streamable HTTP, so no local setup required. The full Pipeworx gateway gives you access to hundreds of other scientific and public data APIs if you need more than PRIDE alone.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
Part of Pipeworx — an MCP gateway connecting AI agents to 823+ live data sources.
| Tool | Description |
|---|
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"pride": {
"url": "https://gateway.pipeworx.io/pride/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 823+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Pride data" })
The gateway picks the right tool and fills the arguments automatically.
MIT
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