Connects Claude to the Reactome pathway database, exposing five tools for querying biological pathways and molecular interactions. You can search across all objects, pull full pathway records by stable ID, list entity participants, find pathways containing specific proteins via UniProt accessions, and query orthologous events across species. Runs through Pipeworx's gateway infrastructure, which offers both a standalone Reactome endpoint and a unified gateway to 673+ data sources. Useful when you need structured pathway data during research or when building biological analysis workflows. Supports plain English queries through ask_pipeworx instead of direct tool calls.
claude mcp add --transport http io.github.pipeworx-io-reactome https://gateway.pipeworx.io/reactome/mcp