Summary
This is a multi-database metabolomics research tool that pulls from HMDB, MetaboLights, Metabolomics Workbench, and PubChem to annotate metabolites and find studies. Feed it a list of metabolites like glucose or lactate and it returns HMDB IDs, chemical properties, and pathway information in a structured markdown report. You can also search for studies by disease or keyword, or pull specific study details using IDs like MTBLS1. It's built around a four-phase pipeline that handles identification, study retrieval, search, and database overviews. Useful if you're doing mass spec annotation or need to quickly map metabolites to pathways without clicking through multiple web interfaces. The SOAP-based HMDB tools require special handling, which the skill manages automatically.
Install to Claude Code
npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-metabolomics --agent claude-codeInstalls into .claude/skills of the current project.
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On Capafy, your Skill runs online 24/7 as an agent product, and you get paid every time someone uses it.
Start earning →An agent that runs the SEO playbooks that move rankings and ships PRs you control.
Get founding access →Connect Claude to +800M contacts, +150M companies. Find & Enrich leads in chat.
Try For Free →Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →
