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Paleobiodb

pipeworx-io/mcp-paleobiodb
HTTPregistry active
Summary

Connects Claude to the Paleobiology Database, the open repository of fossil occurrence and taxonomic data spanning 540 million years. No API key required. Part of the Pipeworx gateway system that routes to 808+ data sources. You can either query fossil records directly through individual tools or use the ask_pipeworx interface to ask questions in plain English and let it select the right API calls. Useful when you need programmatic access to paleontological datasets for research, education, or building tools that work with deep time biological data. Runs over streamable HTTP, so it works with any MCP client that supports remote connections.

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mcp-paleobiodb

Paleobiology Database (PBDB) MCP — the global fossil record. Keyless.

Part of Pipeworx — an MCP gateway connecting AI agents to 1476+ live data sources.

Tools

ToolDescription
find_fossilsFind fossil occurrences for a taxon from the Paleobiology Database (the global fossil record). Returns occurrences with collection locations (lat/lng, country) and geologic ages. base_name matching includes the taxon and all of its subtaxa. Ages are in millions of years (Ma). Keyless.
get_taxonLook up a single taxon in the Paleobiology Database: its taxonomic rank, attribution (author + year), first/last appearance intervals and ages (in millions of years, Ma), and number of subtaxa. Keyless.
list_subtaxaList the direct child taxa (subtaxa) of a taxon from the Paleobiology Database, with each child's rank and number of its own subtaxa. Keyless.

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "paleobiodb": {
      "url": "https://gateway.pipeworx.io/paleobiodb/mcp"
    }
  }
}

What this endpoint actually serves

tools/list at https://gateway.pipeworx.io/paleobiodb/mcp returns the tools in the table above plus the shared Pipeworx meta-tools — ask_pipeworx, discover_tools, search_within, remember/recall and the rest of the gateway-wide set. So the tool count you see is larger than this table: a single-pack endpoint currently lists roughly 30 shared tools alongside the pack's own. The connection's initialize response states its exact scope, and is the authoritative answer for a given day.

This is deliberate, not multiplexing by accident. The meta-tools are what let a scoped connection answer a question this pack does not cover — via ask_pipeworx, which routes across the whole catalog — without you adding a second MCP server. There is currently no way to mount a pack endpoint without them; if the extra schemas cost you more context than the routing is worth, connect to the full gateway once rather than to several pack endpoints.

Or connect to the full Pipeworx gateway to get every pack's tools listed directly, instead of just this one's:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Both URLs reach the same gateway and the same 1476+ data sources. The only difference is which pack's tools are listed directly; ask_pipeworx reaches all of them from either one.

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English — this works on the pack endpoint above as well as on the full gateway:

ask_pipeworx({ question: "your question about Paleobiodb data" })

The gateway picks the right tool and fills the arguments automatically.

More

  • Docs and guides
  • pipeworx.io

License

MIT

No MCP client? Call it over HTTP

curl -X POST https://gateway.pipeworx.io/v1/tools/find_fossils \
  -H 'Content-Type: application/json' \
  -d '{"taxon":"Tyrannosaurus"}'

No account needed for the first calls. Inspect any tool: GET https://gateway.pipeworx.io/v1/tools/find_fossils. Find one: POST https://gateway.pipeworx.io/v1/tools/search_packs with {"query":"..."}.

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Categories
Databases
Registryactive
TransportHTTP
UpdatedJun 8, 2026
View on GitHub

More from pipeworx-io

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