Connects Claude to PomBase, the fission yeast research database used by molecular biologists studying Schizosaccharomyces pombe. Hosted through Pipeworx's gateway infrastructure, which routes requests to 823+ scientific and public data sources. The source doesn't list specific tools, but PomBase typically exposes gene lookups, phenotype searches, protein interaction queries, and GO term annotations. You'd reach for this if you're doing literature research on yeast genetics, comparing model organism data, or building research workflows that need programmatic access to curated biological datasets. Can use ask_pipeworx for natural language queries instead of direct tool calls.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
Part of Pipeworx — an MCP gateway connecting AI agents to 823+ live data sources.
| Tool | Description |
|---|
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"pombase": {
"url": "https://gateway.pipeworx.io/pombase/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 823+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Pombase data" })
The gateway picks the right tool and fills the arguments automatically.
MIT
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