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mims-harvard avatar

Tooluniverse Image Analysis

mims-harvard/tooluniverse
617 installs1.6k stars
Summary

This handles the statistical backend for microscopy experiments when you've already got measurement tables from ImageJ or CellProfiler. It's built around a specific workflow: colony morphometry, fluorescence quantification, cell counts, then statistical comparisons using pandas, scipy, and statsmodels. The skill emphasizes checking for pre-computed results before re-running analyses, which is practical for reproducibility but tells you this was written for a lab environment where notebooks get re-executed. Includes Dunnett's test for multi-group comparisons, Cohen's d for effect sizes, and polynomial or spline regression for dose-response curves. One gotcha clearly learned from experience: it defaults "relative proportion" questions to percentages, not decimal ratios, because that's what biology assay ground truths expect.

Install to Claude Code

npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-image-analysis --agent claude-code

Installs into .claude/skills of the current project.

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Files
SKILL.md

Select a file.

Featured
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Categories
Data Science & ML
First SeenJun 3, 2026
View on GitHub

More from mims-harvard/tooluniverse

All 68 skills →
  • Tooluniverse Clinical Guidelines444
  • Tooluniverse433
  • Tooluniverse Drug Research432
  • Tooluniverse Clinical Trial Design423
  • Tooluniverse Drug Drug Interaction413
  • Setup Tooluniverse408
  • Tooluniverse Disease Research404
  • Tooluniverse Protein Structure Retrieval397
  • Tooluniverse Epigenomics389
  • Tooluniverse Systems Biology389
  • Tooluniverse Pharmacovigilance388
  • Tooluniverse Network Pharmacology387
  • Tooluniverse Precision Oncology385
  • Tooluniverse Chemical Compound Retrieval381
  • Create Tooluniverse Skill376
  • Tooluniverse Proteomics Analysis375
  • Tooluniverse Rare Disease Diagnosis375
  • Tooluniverse Target Research373
  • Tooluniverse Expression Data Retrieval370
  • Tooluniverse Clinical Trial Matching367
  • Tooluniverse Spatial Transcriptomics367
  • Tooluniverse Drug Repurposing366
  • Tooluniverse Protein Therapeutic Design366
  • Tooluniverse Sdk366

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